IL_9BUP_195

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9BUP|1|SA|U|1370

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_195 not in the Motif Atlas

Homologous match to IL_8P9A_437

Geometric discrepancy: 0.1731

The information below is about IL_8P9A_437

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

9BUP|1|SA|G|1369
9BUP|1|SA|U|1370
9BUP|1|SA|G|1371
*
9BUP|1|SA|C|1686
9BUP|1|SA|C|1687

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SD

40S ribosomal protein S3

Chain SO

40S ribosomal protein S10

Chain ST

40S ribosomal protein S29