IL_9BUP_202

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AAUUA*UUCUU

Length

10 nucleotides

Bulged bases

9BUP|1|SA|U|1448, 9BUP|1|SA|U|1449

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BUP|1|SA|A|1446
9BUP|1|SA|A|1447
9BUP|1|SA|U|1448
9BUP|1|SA|U|1449
9BUP|1|SA|A|1450
*
9BUP|1|SA|U|1623
9BUP|1|SA|U|1624
9BUP|1|SA|C|1625
9BUP|1|SA|U|1626
9BUP|1|SA|U|1627

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SD

40S ribosomal protein S3

Chain SM

40S ribosomal protein S16

Chain SN

40S ribosomal protein S20e