IL_9BUP_205

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUCC*GUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_205 not in the Motif Atlas

Homologous match to IL_8P9A_450

Geometric discrepancy: 0.3517

The information below is about IL_8P9A_450

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_76776.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

9BUP|1|SA|C|1791
9BUP|1|SA|U|1792
9BUP|1|SA|C|1793
9BUP|1|SA|C|1794
*
9BUP|1|SA|G|1805
9BUP|1|SA|U|1806
9BUP|1|SA|A|1807
9BUP|1|SA|G|1808

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SY

40S ribosomal protein S19