3D structure

PDB id
9BUP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CGAU*AAAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9BUP_214 not in the Motif Atlas
Homologous match to IL_8P9A_457
Geometric discrepancy: 0.1004
The information below is about IL_8P9A_457
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_58355.2
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
43

Unit IDs

9BUP|1|SA|C|1950
9BUP|1|SA|G|1951
9BUP|1|SA|A|1952
9BUP|1|SA|U|1953
*
9BUP|1|SA|A|2036
9BUP|1|SA|A|2037
9BUP|1|SA|A|2038
9BUP|1|SA|G|2039

Current chains

Chain SA
18S ribosomal RNA

Nearby chains

Chain AA
Large subunit ribosomal RNA; LSU rRNA
Chain Ag
60S ribosomal protein L41

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1042 s