IL_9BUP_219

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGGAC*GGAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_219 not in the Motif Atlas

Homologous match to IL_8CRE_476

Geometric discrepancy: 0.1194

The information below is about IL_8CRE_476

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

9BUP|1|SA|U|1975
9BUP|1|SA|G|1976
9BUP|1|SA|G|1977
9BUP|1|SA|A|1978
9BUP|1|SA|C|1979
*
9BUP|1|SA|G|2011
9BUP|1|SA|G|2012
9BUP|1|SA|A|2013
9BUP|1|SA|A|2014
9BUP|1|SA|A|2015

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain A0

60S ribosomal protein L24

Chain SH

40S ribosomal protein S6

Chain SL

40S ribosomal protein S8