IL_9C3H_004

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UAA*UCGA

Length

7 nucleotides

Bulged bases

9C3H|1|L1|G|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_004 not in the Motif Atlas

Homologous match to IL_8P9A_371

Geometric discrepancy: 0.1601

The information below is about IL_8P9A_371

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_76400.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

9C3H|1|L1|U|64
9C3H|1|L1|A|65
9C3H|1|L1|A|66
*
9C3H|1|L1|U|92
9C3H|1|L1|C|93
9C3H|1|L1|G|94
9C3H|1|L1|A|95

Current chains

Chain L1

5.8S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LE

Large ribosomal subunit protein uL24

Chain LO

Large ribosomal subunit protein uL29

Chain LP

Large ribosomal subunit protein eL37