IL_9C3H_022

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GAG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_022 not in the Motif Atlas

Geometric match to IL_4V88_467

Geometric discrepancy: 0.1752

The information below is about IL_4V88_467

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

9C3H|1|L5|G|462
9C3H|1|L5|A|463
9C3H|1|L5|G|464
*
9C3H|1|L5|C|691
9C3H|1|L5|A|692
9C3H|1|L5|C|693

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LK

Large ribosomal subunit protein eL6

Chain Ll

Large ribosomal subunit protein eL28