IL_9C3H_026

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9C3H|1|L5|U|492

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_026 not in the Motif Atlas

Geometric match to IL_8VTW_037

Geometric discrepancy: 0.2678

The information below is about IL_8VTW_037

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

9C3H|1|L5|G|491
9C3H|1|L5|U|492
9C3H|1|L5|G|493
*
9C3H|1|L5|C|661
9C3H|1|L5|C|662

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain Lj

Large ribosomal subunit protein eL18