IL_9C3H_036

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UCGG*CGA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_036 not in the Motif Atlas

Geometric match to IL_4V87_185

Geometric discrepancy: 0.3531

The information below is about IL_4V87_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

9C3H|1|L5|U|754
9C3H|1|L5|C|755
9C3H|1|L5|G|756
9C3H|1|L5|G|757
*
9C3H|1|L5|C|907
9C3H|1|L5|G|908
9C3H|1|L5|A|909

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

Large ribosomal subunit protein uL6

Chain LM

Large ribosomal subunit protein eL14

Chain LS

Large ribosomal subunit protein eL20