IL_9C3H_039

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

9C3H|1|L5|C|1214, 9C3H|1|L5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_039 not in the Motif Atlas

Geometric match to IL_7A0S_030

Geometric discrepancy: 0.3404

The information below is about IL_7A0S_030

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

9C3H|1|L5|C|1082
9C3H|1|L5|U|1083
9C3H|1|L5|C|1084
*
9C3H|1|L5|G|1213
9C3H|1|L5|C|1214
9C3H|1|L5|C|1215
9C3H|1|L5|C|1216
9C3H|1|L5|G|1217

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

Large ribosomal subunit protein uL30

Chain Lb

Large ribosomal subunit protein eL29