IL_9C3H_045

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

9C3H|1|L5|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_045 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1636

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

9C3H|1|L5|G|1360
9C3H|1|L5|G|1361
*
9C3H|1|L5|C|1376
9C3H|1|L5|G|1377
9C3H|1|L5|C|1378
9C3H|1|L5|C|1379

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LN

Large ribosomal subunit protein eL15

Chain LQ

Large ribosomal subunit protein eL13