IL_9C3H_047

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_047 not in the Motif Atlas

Geometric match to IL_8C3A_404

Geometric discrepancy: 0.1183

The information below is about IL_8C3A_404

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

9C3H|1|L5|C|1431
9C3H|1|L5|G|1432
9C3H|1|L5|A|1433
9C3H|1|L5|G|1434
*
9C3H|1|L5|C|1450
9C3H|1|L5|G|1451
9C3H|1|L5|A|1452
9C3H|1|L5|G|1453

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lj

Large ribosomal subunit protein eL18