IL_9C3H_056

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GGUC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_056 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.0556

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

9C3H|1|L5|G|1586
9C3H|1|L5|G|1587
9C3H|1|L5|U|1588
9C3H|1|L5|C|1589
*
9C3H|1|L5|G|1605
9C3H|1|L5|U|1606
9C3H|1|L5|C|1607

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

Large ribosomal subunit protein eL37