IL_9C3H_074

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UGC*GG

Length

5 nucleotides

Bulged bases

9C3H|1|L5|G|1919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_074 not in the Motif Atlas

Geometric match to IL_7D7V_002

Geometric discrepancy: 0.3879

The information below is about IL_7D7V_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

9C3H|1|L5|U|1918
9C3H|1|L5|G|1919
9C3H|1|L5|C|1920
*
9C3H|1|L5|G|2063
9C3H|1|L5|G|2064

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

Large ribosomal subunit protein uL30

Chain LS

Large ribosomal subunit protein eL20

Chain LY

Large ribosomal subunit protein uL13

Chain Lf

Large ribosomal subunit protein eL33