IL_9C3H_082

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

9C3H|1|L5|A|2300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_082 not in the Motif Atlas

Homologous match to IL_8C3A_062

Geometric discrepancy: 0.5209

The information below is about IL_8C3A_062

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

9C3H|1|L5|G|2299
9C3H|1|L5|A|2300
9C3H|1|L5|G|2301
*
9C3H|1|L5|C|2334
9C3H|1|L5|C|2335

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

Large ribosomal subunit protein uL4

Chain LI

Large ribosomal subunit protein eL32

Chain Ll

Large ribosomal subunit protein eL28