IL_9C3H_084

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

9C3H|1|L5|A|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_084 not in the Motif Atlas

Homologous match to IL_8P9A_288

Geometric discrepancy: 0.5344

The information below is about IL_8P9A_288

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9C3H|1|L5|U|2312
9C3H|1|L5|A|2313
9C3H|1|L5|G|2314
*
9C3H|1|L5|C|2325
9C3H|1|L5|G|2326

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain LI

Large ribosomal subunit protein eL32

Chain Ll

Large ribosomal subunit protein eL28