IL_9C3H_086

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_086 not in the Motif Atlas

Geometric match to IL_4V9F_050

Geometric discrepancy: 0.1043

The information below is about IL_4V9F_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

9C3H|1|L5|G|2406
9C3H|1|L5|G|2407
9C3H|1|L5|U|2408
9C3H|1|L5|U|2409
*
9C3H|1|L5|A|2783
9C3H|1|L5|C|2784

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

Large ribosomal subunit protein eL37

Chain LU

Large ribosomal subunit protein eL39

Chain Lg

Large ribosomal subunit protein eL34

Chain Ln

Large ribosomal subunit protein uL23