IL_9C3H_091

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_091 not in the Motif Atlas

Homologous match to IL_8P9A_295

Geometric discrepancy: 0.2025

The information below is about IL_8P9A_295

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

9C3H|1|L5|C|2589
9C3H|1|L5|G|2590
9C3H|1|L5|A|2591
9C3H|1|L5|U|2592
9C3H|1|L5|C|2593
*
9C3H|1|L5|G|2752
9C3H|1|L5|G|2753
9C3H|1|L5|G|2754
9C3H|1|L5|A|2755
9C3H|1|L5|G|2756

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL2

Chain LZ

Large ribosomal subunit protein eL27

Chain Lg

Large ribosomal subunit protein eL34