IL_9C3H_110

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

C(OMC)AG*CG

Length

6 nucleotides

Bulged bases

9C3H|1|L5|OMC|3701

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_110 not in the Motif Atlas

Homologous match to IL_8C3A_089

Geometric discrepancy: 0.0721

The information below is about IL_8C3A_089

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9C3H|1|L5|C|3700
9C3H|1|L5|OMC|3701
9C3H|1|L5|A|3702
9C3H|1|L5|G|3703
*
9C3H|1|L5|C|3749
9C3H|1|L5|G|3750

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL2

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SB

CCR4-NOT transcription complex subunit 3