IL_9C3H_113

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

9C3H|1|L5|A|3712, 9C3H|1|L5|U|3713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_113 not in the Motif Atlas

Homologous match to IL_8C3A_092

Geometric discrepancy: 0.5778

The information below is about IL_8C3A_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9C3H|1|L5|G|3710
9C3H|1|L5|A|3711
9C3H|1|L5|A|3712
9C3H|1|L5|U|3713
9C3H|1|L5|G|3714
*
9C3H|1|L5|C|3739
9C3H|1|L5|G|3740
9C3H|1|L5|C|3741

Current chains

Chain L5

28S rRNA

Nearby chains

Chain S1

Small ribosomal subunit protein eS1

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SB

CCR4-NOT transcription complex subunit 3