IL_9C3H_118

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

9C3H|1|L5|A|3901, 9C3H|1|L5|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_118 not in the Motif Atlas

Homologous match to IL_8P9A_320

Geometric discrepancy: 0.079

The information below is about IL_8P9A_320

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

9C3H|1|L5|G|3900
9C3H|1|L5|A|3901
9C3H|1|L5|A|3902
*
9C3H|1|L5|U|4558
9C3H|1|L5|A|4559
9C3H|1|L5|C|4560
9C3H|1|L5|C|4561

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain Lh

Large ribosomal subunit protein uL22

Chain NC

Nascent chain