IL_9C3H_121

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

9C3H|1|L5|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_121 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.1016

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

9C3H|1|L5|U|3927
9C3H|1|L5|A|3928
9C3H|1|L5|G|3929
*
9C3H|1|L5|U|4181
9C3H|1|L5|G|4182
9C3H|1|L5|G|4183
9C3H|1|L5|G|4184

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL2

Chain LN

Large ribosomal subunit protein eL15

Chain Le

Large ribosomal subunit protein eL42