IL_9C3H_136

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

9C3H|1|L5|A|4518, 9C3H|1|L5|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_136 not in the Motif Atlas

Homologous match to IL_8C3A_117

Geometric discrepancy: 0.0786

The information below is about IL_8C3A_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

9C3H|1|L5|C|4458
9C3H|1|L5|U|4459
*
9C3H|1|L5|A|4517
9C3H|1|L5|A|4518
9C3H|1|L5|C|4519
9C3H|1|L5|G|4520

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

Large ribosomal subunit protein uL14

Chain LY

Large ribosomal subunit protein uL13