IL_9C3H_139

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

9C3H|1|L5|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_139 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3978

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9C3H|1|L5|U|4468
9C3H|1|L5|U|4469
9C3H|1|L5|G|4470
*
9C3H|1|L5|C|4485
9C3H|1|L5|C|4486
9C3H|1|L5|A|4487
9C3H|1|L5|A|4488
9C3H|1|L5|G|4489

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

Large ribosomal subunit protein uL6

Chain LY

Large ribosomal subunit protein uL13

Chain Lo

Large ribosomal subunit protein eL40