IL_9C3H_143

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

9C3H|1|L5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_143 not in the Motif Atlas

Geometric match to IL_8T29_001

Geometric discrepancy: 0.3489

The information below is about IL_8T29_001

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9C3H|1|L5|C|4582
9C3H|1|L5|C|4583
9C3H|1|L5|A|4584
9C3H|1|L5|U|4585
*
9C3H|1|L5|A|4717
9C3H|1|L5|G|4718
9C3H|1|L5|G|4719
9C3H|1|L5|C|4720
9C3H|1|L5|G|4721

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain LB

Large ribosomal subunit protein uL3

Chain LY

Large ribosomal subunit protein uL13