IL_9C3H_149

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

9C3H|1|L5|A|4656, 9C3H|1|L5|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_149 not in the Motif Atlas

Homologous match to IL_8C3A_128

Geometric discrepancy: 0.3298

The information below is about IL_8C3A_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

9C3H|1|L5|U|4641
9C3H|1|L5|U|4642
*
9C3H|1|L5|A|4655
9C3H|1|L5|A|4656
9C3H|1|L5|U|4657
9C3H|1|L5|G|4658

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19

Chain Ld

Large ribosomal subunit protein eL31