IL_9C3H_154

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CCUCGGAUAG*U(OMG)C(2MG)GAGUG

Length

19 nucleotides

Bulged bases

9C3H|1|L5|C|4757, 9C3H|1|L5|U|4758, 9C3H|1|L5|A|4764, 9C3H|1|L5|OMG|4870, 9C3H|1|L5|C|4871, 9C3H|1|L5|G|4873, 9C3H|1|L5|U|4876

QA status

Modified nucleotides: OMG, 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9C3H|1|L5|C|4756
9C3H|1|L5|C|4757
9C3H|1|L5|U|4758
9C3H|1|L5|C|4759
9C3H|1|L5|G|4760
9C3H|1|L5|G|4761
9C3H|1|L5|A|4762
9C3H|1|L5|U|4763
9C3H|1|L5|A|4764
9C3H|1|L5|G|4765
*
9C3H|1|L5|U|4869
9C3H|1|L5|OMG|4870
9C3H|1|L5|C|4871
9C3H|1|L5|2MG|4872
9C3H|1|L5|G|4873
9C3H|1|L5|A|4874
9C3H|1|L5|G|4875
9C3H|1|L5|U|4876
9C3H|1|L5|G|4877

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

Large ribosomal subunit protein uL6

Chain LK

Large ribosomal subunit protein eL6

Chain LM

Large ribosomal subunit protein eL14

Chain LS

Large ribosomal subunit protein eL20

Chain LY

Large ribosomal subunit protein uL13