IL_9C3H_156

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UCCUG*CGUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_156 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.3292

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

9C3H|1|L5|U|4885
9C3H|1|L5|C|4886
9C3H|1|L5|C|4887
9C3H|1|L5|U|4888
9C3H|1|L5|G|4889
*
9C3H|1|L5|C|4930
9C3H|1|L5|G|4931
9C3H|1|L5|U|4932
9C3H|1|L5|C|4933
9C3H|1|L5|A|4934

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LK

Large ribosomal subunit protein eL6

Chain LM

Large ribosomal subunit protein eL14

Chain LY

Large ribosomal subunit protein uL13