IL_9C3H_175

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CAAA*UGA(OMC)G

Length

9 nucleotides

Bulged bases

9C3H|1|S2|A|516

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_175 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3381

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9C3H|1|S2|C|37
9C3H|1|S2|A|38
9C3H|1|S2|A|39
9C3H|1|S2|A|40
*
9C3H|1|S2|U|514
9C3H|1|S2|G|515
9C3H|1|S2|A|516
9C3H|1|S2|OMC|517
9C3H|1|S2|G|518

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SJ

Small ribosomal subunit protein uS4

Chain SY

Isoform 3 of Small ribosomal subunit protein eS24