IL_9C3H_186

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CUGAC*GGA(PSU)G

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_186 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.209

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9C3H|1|S2|C|188
9C3H|1|S2|U|189
9C3H|1|S2|G|190
9C3H|1|S2|A|191
9C3H|1|S2|C|192
*
9C3H|1|S2|G|207
9C3H|1|S2|G|208
9C3H|1|S2|A|209
9C3H|1|S2|PSU|210
9C3H|1|S2|G|211

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

Small ribosomal subunit protein eS8