IL_9C3H_198
3D structure
- PDB id
- 9C3H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- UACAG*CCUGUAA
- Length
- 12 nucleotides
- Bulged bases
- 9C3H|1|S2|U|553, 9C3H|1|S2|A|554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9C3H_198 not in the Motif Atlas
- Geometric match to IL_7VYX_008
- Geometric discrepancy: 0.3135
- The information below is about IL_7VYX_008
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.2
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
9C3H|1|S2|U|530
9C3H|1|S2|A|531
9C3H|1|S2|C|532
9C3H|1|S2|A|533
9C3H|1|S2|G|534
*
9C3H|1|S2|C|549
9C3H|1|S2|C|550
9C3H|1|S2|U|551
9C3H|1|S2|G|552
9C3H|1|S2|U|553
9C3H|1|S2|A|554
9C3H|1|S2|A|555
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SJ
- Small ribosomal subunit protein uS4
- Chain Se
- FAU ubiquitin-like and ribosomal protein S30
Coloring options: