IL_9C3H_199

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GAG*CGAGG(A2M)UC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_199 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.1071

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

9C3H|1|S2|G|563
9C3H|1|S2|A|564
9C3H|1|S2|G|565
*
9C3H|1|S2|C|585
9C3H|1|S2|G|586
9C3H|1|S2|A|587
9C3H|1|S2|G|588
9C3H|1|S2|G|589
9C3H|1|S2|A2M|590
9C3H|1|S2|U|591
9C3H|1|S2|C|592

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SJ

Small ribosomal subunit protein uS4

Chain Se

FAU ubiquitin-like and ribosomal protein S30