IL_9C3H_205

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

9C3H|1|S2|A2M|668

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_205 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.1044

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9C3H|1|S2|G|665
9C3H|1|S2|U|666
9C3H|1|S2|U|667
9C3H|1|S2|A2M|668
9C3H|1|S2|A|669
9C3H|1|S2|A|670
9C3H|1|S2|A|671
*
9C3H|1|S2|U|1161
9C3H|1|S2|C|1162

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SX

Small ribosomal subunit protein uS12

Chain Sa

Small ribosomal subunit protein eS26