IL_9C3H_211

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CC*GCCG

Length

6 nucleotides

Bulged bases

9C3H|1|S2|C|839, 9C3H|1|S2|C|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_211 not in the Motif Atlas

Geometric match to IL_4V9F_088

Geometric discrepancy: 0.1782

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

9C3H|1|S2|C|833
9C3H|1|S2|C|834
*
9C3H|1|S2|G|838
9C3H|1|S2|C|839
9C3H|1|S2|C|840
9C3H|1|S2|G|841

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SY

Isoform 3 of Small ribosomal subunit protein eS24