IL_9C3H_214

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_214 not in the Motif Atlas

Geometric match to IL_4V88_428

Geometric discrepancy: 0.0845

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

9C3H|1|S2|A|922
9C3H|1|S2|G|923
*
9C3H|1|S2|C|1019
9C3H|1|S2|A|1020
9C3H|1|S2|U|1021
9C3H|1|S2|U|1022

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SN

Small ribosomal subunit protein uS15

Chain SW

Small ribosomal subunit protein uS8

Chain Sb

Small ribosomal subunit protein eS27