IL_9C3H_225

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_225 not in the Motif Atlas

Geometric match to IL_4V88_412

Geometric discrepancy: 0.1716

The information below is about IL_4V88_412

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

9C3H|1|S2|G|1108
9C3H|1|S2|C|1109
9C3H|1|S2|G|1110
*
9C3H|1|S2|C|1123
9C3H|1|S2|C|1124

Current chains

Chain S2

18S rRNA

Nearby chains

Chain S1

Small ribosomal subunit protein eS1

Chain SA

Small ribosomal subunit protein uS2

Chain SS

Small ribosomal subunit protein eS17

Chain Sb

Small ribosomal subunit protein eS27