IL_9C3H_228

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GGA*U(PSU)

Length

5 nucleotides

Bulged bases

9C3H|1|S2|G|1207

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_228 not in the Motif Atlas

Homologous match to IL_8C3A_448

Geometric discrepancy: 0.2057

The information below is about IL_8C3A_448

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.11

Basepair signature

cWW-L-cWW

Number of instances in this motif group

46

Unit IDs

9C3H|1|S2|G|1206
9C3H|1|S2|G|1207
9C3H|1|S2|A|1208
*
9C3H|1|S2|U|1691
9C3H|1|S2|PSU|1692

Current chains

Chain S2

18S rRNA

Nearby chains

Chain S4

Transfer RNA; tRNA

Chain S5

mRNA

Chain SO

Small ribosomal subunit protein uS11

Chain Sa

Small ribosomal subunit protein eS26