IL_9C3H_237
3D structure
- PDB id
- 9C3H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 9C3H|1|S2|C|1331, 9C3H|1|S2|U|1494, 9C3H|1|S2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9C3H_237 not in the Motif Atlas
- Geometric match to IL_4V88_510
- Geometric discrepancy: 0.1191
- The information below is about IL_4V88_510
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62984.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
9C3H|1|S2|U|1329
9C3H|1|S2|G|1330
9C3H|1|S2|C|1331
9C3H|1|S2|A|1332
9C3H|1|S2|U|1333
9C3H|1|S2|G|1334
9C3H|1|S2|G|1335
*
9C3H|1|S2|U|1492
9C3H|1|S2|C|1493
9C3H|1|S2|U|1494
9C3H|1|S2|G|1495
9C3H|1|S2|U|1496
9C3H|1|S2|G|1497
9C3H|1|S2|A|1498
9C3H|1|S2|U|1499
9C3H|1|S2|G|1500
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain S5
- mRNA
- Chain SK
- Small ribosomal subunit protein uS3
- Chain SM
- Small ribosomal subunit protein eS10
- Chain SZ
- Small ribosomal subunit protein uS10
- Chain Sf
- Small ribosomal subunit protein uS14
- Chain Sz
- Ubiquitin-40S ribosomal protein S27a
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