IL_9C3H_240

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

(PSU)GG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_240 not in the Motif Atlas

Homologous match to IL_8P9A_442

Geometric discrepancy: 0.0971

The information below is about IL_8P9A_442

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

9C3H|1|S2|PSU|1347
9C3H|1|S2|G|1348
9C3H|1|S2|G|1349
*
9C3H|1|S2|C|1380
9C3H|1|S2|G|1381
9C3H|1|S2|A|1382

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS2

Chain SC

Small ribosomal subunit protein uS5

Chain SK

Small ribosomal subunit protein uS3

Chain SS

Small ribosomal subunit protein eS17