IL_9C3H_241

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_241 not in the Motif Atlas

Homologous match to IL_8P9A_443

Geometric discrepancy: 0.0917

The information below is about IL_8P9A_443

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

9C3H|1|S2|C|1363
9C3H|1|S2|U|1364
9C3H|1|S2|G|1365
*
9C3H|1|S2|C|1374
9C3H|1|S2|G|1375

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS17

Chain Sa

Small ribosomal subunit protein eS26