IL_9C3H_252
3D structure
- PDB id
- 9C3H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- G(OMC)CC*GUA(6MZ)C
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC, 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9C3H_252 not in the Motif Atlas
- Homologous match to IL_8P9A_453
- Geometric discrepancy: 0.0669
- The information below is about IL_8P9A_453
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25873.2
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9C3H|1|S2|G|1702
9C3H|1|S2|OMC|1703
9C3H|1|S2|C|1704
9C3H|1|S2|C|1705
*
9C3H|1|S2|G|1829
9C3H|1|S2|U|1830
9C3H|1|S2|A|1831
9C3H|1|S2|6MZ|1832
9C3H|1|S2|C|1833
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain S4
- Transfer RNA; tRNA
- Chain S5
- mRNA
- Chain So
- Small ribosomal subunit protein eS32
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