IL_9C6J_001

3D structure

PDB id

9C6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group IIC intron embedded with the TPP riboswitch

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GCAUG*CUUACC

Length

11 nucleotides

Bulged bases

9C6J|1|A|U|13, 9C6J|1|A|A|260, 9C6J|1|A|C|261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C6J_001 not in the Motif Atlas

Geometric match to IL_3IGI_001

Geometric discrepancy: 0.1175

The information below is about IL_3IGI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99498.1

Basepair signature

cWW-L-R-tHW-cWW

Number of instances in this motif group

1

Unit IDs

9C6J|1|A|G|10
9C6J|1|A|C|11
9C6J|1|A|A|12
9C6J|1|A|U|13
9C6J|1|A|G|14
*
9C6J|1|A|C|257
9C6J|1|A|U|258
9C6J|1|A|U|259
9C6J|1|A|A|260
9C6J|1|A|C|261
9C6J|1|A|C|262

Current chains

Chain A

Group IIC intron embedded with the TPP riboswitch

Nearby chains