IL_9C6J_002

3D structure

PDB id

9C6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group IIC intron embedded with the TPP riboswitch

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

CUAAC*GGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C6J_002 not in the Motif Atlas

Geometric match to IL_3IGI_002

Geometric discrepancy: 0.0948

The information below is about IL_3IGI_002

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

9C6J|1|A|C|70
9C6J|1|A|U|71
9C6J|1|A|A|72
9C6J|1|A|A|73
9C6J|1|A|C|74
*
9C6J|1|A|G|113
9C6J|1|A|G|114
9C6J|1|A|A|115
9C6J|1|A|C|116
9C6J|1|A|G|117

Current chains

Chain A

Group IIC intron embedded with the TPP riboswitch

Nearby chains