IL_9C6J_005

3D structure

PDB id

9C6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group IIC intron embedded with the TPP riboswitch

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GG*UUGAU

Length

7 nucleotides

Bulged bases

9C6J|1|A|G|236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C6J_005 not in the Motif Atlas

Geometric match to IL_3IGI_005

Geometric discrepancy: 0.1108

The information below is about IL_3IGI_005

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_26685.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

9C6J|1|A|G|128
9C6J|1|A|G|129
*
9C6J|1|A|U|234
9C6J|1|A|U|235
9C6J|1|A|G|236
9C6J|1|A|A|237
9C6J|1|A|U|238

Current chains

Chain A

Group IIC intron embedded with the TPP riboswitch

Nearby chains