IL_9C6J_007

3D structure

PDB id

9C6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group IIC intron embedded with the TPP riboswitch

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

UAGG*CAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C6J_007 not in the Motif Atlas

Geometric match to IL_8BH9_001

Geometric discrepancy: 0.385

The information below is about IL_8BH9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

9C6J|1|A|U|158
9C6J|1|A|A|159
9C6J|1|A|G|160
9C6J|1|A|G|161
*
9C6J|1|A|C|216
9C6J|1|A|A|217
9C6J|1|A|G|218
9C6J|1|A|A|219

Current chains

Chain A

Group IIC intron embedded with the TPP riboswitch

Nearby chains