IL_9C6J_010

3D structure

PDB id

9C6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group IIC intron embedded with the TPP riboswitch

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GAGGU*AAGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C6J_010 not in the Motif Atlas

Geometric match to IL_3IGI_010

Geometric discrepancy: 0.0897

The information below is about IL_3IGI_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96788.1

Basepair signature

cWW-tHW-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9C6J|1|A|G|267
9C6J|1|A|A|268
9C6J|1|A|G|269
9C6J|1|A|G|270
9C6J|1|A|U|271
*
9C6J|1|A|A|282
9C6J|1|A|A|283
9C6J|1|A|G|284
9C6J|1|A|U|285
9C6J|1|A|C|286

Current chains

Chain A

Group IIC intron embedded with the TPP riboswitch

Nearby chains