IL_9C6J_013

3D structure

PDB id

9C6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group IIC intron embedded with the TPP riboswitch

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

UAUG*CUAAG

Length

9 nucleotides

Bulged bases

9C6J|1|A|U|334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C6J_013 not in the Motif Atlas

Geometric match to IL_5Y7M_005

Geometric discrepancy: 0.2627

The information below is about IL_5Y7M_005

Detailed Annotation

Receptor of 11-nt loop-receptor motif

Broad Annotation

Loop-receptor motif

Motif group

IL_87739.1

Basepair signature

cWW-tWH-cSH-cWW

Number of instances in this motif group

10

Unit IDs

9C6J|1|A|U|332
9C6J|1|A|A|333
9C6J|1|A|U|334
9C6J|1|A|G|335
*
9C6J|1|A|C|346
9C6J|1|A|U|347
9C6J|1|A|A|348
9C6J|1|A|A|349
9C6J|1|A|G|350

Current chains

Chain A

Group IIC intron embedded with the TPP riboswitch

Nearby chains