IL_9C8K_022

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C8K_022 not in the Motif Atlas

Homologous match to IL_8C3A_423

Geometric discrepancy: 0.1737

The information below is about IL_8C3A_423

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.2

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

9C8K|1|1|A|599
9C8K|1|1|G|600
9C8K|1|1|G|601
9C8K|1|1|G|602
9C8K|1|1|C|603
9C8K|1|1|A|604
9C8K|1|1|A|605
9C8K|1|1|G|606
*
9C8K|1|1|C|636
9C8K|1|1|U|637

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein uS5

Chain J

uS4

Chain e

40S ribosomal protein eS30