IL_9C8K_028
3D structure
- PDB id
- 9C8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9C8K_028 not in the Motif Atlas
- Homologous match to IL_8C3A_428
- Geometric discrepancy: 0.2198
- The information below is about IL_8C3A_428
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.5
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9C8K|1|1|C|676
9C8K|1|1|G|677
9C8K|1|1|U|678
9C8K|1|1|A|679
9C8K|1|1|G|680
*
9C8K|1|1|U|1025
9C8K|1|1|C|1026
9C8K|1|1|A|1027
9C8K|1|1|A|1028
9C8K|1|1|G|1029
Current chains
- Chain 1
- 18S ribosomal RNA
Nearby chains
- Chain L
- uS17
- Chain N
- uS15
- Chain W
- uS8
- Chain X
- uS12
Coloring options: