IL_9C8K_029

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C8K_029 not in the Motif Atlas

Geometric match to IL_6IA2_002

Geometric discrepancy: 0.1716

The information below is about IL_6IA2_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9C8K|1|1|C|745
9C8K|1|1|C|746
9C8K|1|1|U|747
*
9C8K|1|1|A|794
9C8K|1|1|A|795
9C8K|1|1|G|796

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein eS4

Chain H

eS7

Chain L

uS17